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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 1A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Bin assignment(level2)
Break point
Break point
Rice chromosome 10
Rice chromosome 5
Rice chromosome 5
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 1A
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
7 Bin assignment
4 Bin assignment(level2)
5 Break point
3 Break point
2 Rice chromosome 10
3 Rice chromosome 5
1 Rice chromosome 5
25 Total

Map Features

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Items 1 to 25 of 25.
Wheat - Physical Bin Map - 1A
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
1AS-3 0.86 Break point -86.00 No other positions
1AS-1 0.47 Break point -47.00 No other positions
1AL-1 0.17 Break point 17.00 No other positions
1AL-3 0.61 Break point 61.00 No other positions
1AS3-0.86-1.00 Bin assignment -100.00 - -86.00 Wheat - SSR Loci (2005) - 1A Xbarc263 Marker 17.30 (cM) Automated name-based View Maps
1AS1-0.47-0.86 Bin assignment -86.00 - -47.00 No other positions
C-1AS1-0.47 Bin assignment -47.00 - 0.00 No other positions
C1A Bin assignment -5.00 - 5.00 No other positions
C-1AL1-0.17 Bin assignment 0.00 - 17.00 No other positions
1AL1-0.17-0.61 Bin assignment 17.00 - 61.00 Wheat - SSR Loci (2005) - 1A Xbarc17 Marker 126.40 (cM) Automated name-based View Maps
1AL3-0.61-1.00 Bin assignment 61.00 - 100.00 No other positions
1AS-4 0.79 Break point -79.00 No other positions
1AS-2 0.45 Break point -45.00 No other positions
1AS-5 0.20 Break point -20.00 No other positions
1AS1-0.47-0.79 Bin assignment(level2) -79.00 - -47.00 No other positions
1AS2-0.45-0.47 Bin assignment(level2) -47.00 - -45.00 Wheat - SSR Loci (2005) - 1A Xbarc162 Marker 38.30 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 1A Xbarc148 Marker 33.40 (cM) Automated name-based View Maps
1AS5-0.20-0.45 Bin assignment(level2) -45.00 - -20.00 Wheat - SSR Loci (2005) - 3A Xbarc25 Marker 58.20 (cM) Automated name-based View Maps
C-1AS5-0.20 Bin assignment(level2) -20.00 - 0.00 Wheat - SSR Loci (2005) - 1A Xbarc28 Marker 46.60 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 7B Xbarc176 Marker 43.90 (cM) Automated name-based View Maps
centromere Break point 0.00 No other positions
rice chr 5 Rice chromosome 5 17.00 - 61.00 No other positions
rice chr 5 Rice chromosome 5 61.00 - 100.00 No other positions
rice chr10 Rice chromosome 10 17.00 - 61.00 No other positions
rice chr10 Rice chromosome 10 5.00 - 17.00 No other positions
rice chr 5 Rice chromosome 5 -86.00 - -47.00 No other positions
rice chr 5 Rice chromosome 5 -100.00 - -86.00 No other positions