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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Bin assignment(level2)
Bin assignment(level3)
Bin assignment(level4)
Break point
Rice chromosome 4
Rice chromosome 4
Rice chromosome 7
Rice chromosome 7
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 2D
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
7 Bin assignment
2 Bin assignment(level2)
2 Bin assignment(level3)
1 Bin assignment(level4)
5 Break point
3 Rice chromosome 4
1 Rice chromosome 4
3 Rice chromosome 7
1 Rice chromosome 7
25 Total

Map Features

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Items 1 to 25 of 25.
Wheat - Physical Bin Map - 2D
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
2DS-5 0.47 Break point -47.00 No other positions
2DS-1 0.33 Break point -33.00 No other positions
2DL-3 0.49 Break point 49.00 No other positions
2DL-9 0.76 Break point 76.00 No other positions
2DS5-0.47-1.00 Bin assignment -100.00 - -47.00 Wheat - SSR Loci (2005) - 2D Xbarc168 Marker 28.70 (cM) Automated name-based View Maps
2DS1-0.33-0.47 Bin assignment -47.00 - -33.00 No other positions
C-2DS1-0.33 Bin assignment -33.00 - 0.00 No other positions
C2D Bin assignment -5.00 - 5.00 No other positions
C-2DL3-0.49 Bin assignment 0.00 - 49.00 Wheat - SSR Loci (2005) - 2D Xbarc11 Marker 54.20 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 2D Xbarc228 Marker 45.50 (cM) Automated name-based View Maps
2DL3-0.49-0.76 Bin assignment 49.00 - 76.00 No other positions
2DL9-0.76-1.00 Bin assignment 76.00 - 100.00 Wheat - SSR Loci (2005) - 2D Xbarc159 Marker 80.70 (cM) Automated name-based View Maps
2D/2DS Bin assignment(level3) -100.00 - 0.00 No other positions
2D/2DL Bin assignment(level3) 0.00 - 100.00 No other positions
2D Bin assignment(level4) -100.00 - 100.00 No other positions
2DL3-0.49-1.00* Bin assignment(level2) 49.00 - 100.00 No other positions
C-2DS5-0.47* Bin assignment(level2) -47.00 - 0.00 No other positions
centromere Break point 0.00 No other positions
rice chr 7 Rice chromosome 7 -100.00 - -47.00 No other positions
rice chr 4 Rice chromosome 4 -100.00 - -47.00 No other positions
rice chr 7 Rice chromosome 7 -47.00 - -33.00 No other positions
rice chr 7 Rice chromosome 7 -33.00 - -5.00 No other positions
rice chr 4 Rice chromosome 4 5.00 - 49.00 No other positions
rice chr 7 Rice chromosome 7 5.00 - 49.00 No other positions
rice chr 4 Rice chromosome 4 49.00 - 76.00 No other positions
rice chr 4 Rice chromosome 4 76.00 - 100.00 No other positions