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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 3A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Break point
Rice chromosome 1
Unknown point bin assignment
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 3A
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
7 Bin assignment
1 Unknown point bin assignment
5 Break point
6 Rice chromosome 1
19 Total

Map Features

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Items 1 to 19 of 19.
Wheat - Physical Bin Map - 3A
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
3AS-4 0.45 Break point -45.00 No other positions
3AS-2 0.23 Break point -23.00 No other positions
3AL-3 0.42 Break point 42.00 No other positions
3AL-5 0.78 Break point 78.00 No other positions
3AS4-0.45-1.00 Bin assignment -100.00 - -45.00 No other positions
3AS2-0.23-0.45 Bin assignment -45.00 - -23.00 Wheat - SSR Loci (2005) - 3A Xbarc19 Marker 51.70 (cM) Automated name-based View Maps
C-3AS2-0.23 Bin assignment -23.00 - 0.00 Wheat - SSR Loci (2005) - 3A Xbarc67 Marker 51.20 (cM) Automated name-based View Maps
C3A Bin assignment -5.00 - 5.00 No other positions
C-3AL3-0.42 Bin assignment 0.00 - 42.00 Wheat - SSR Loci (2005) - 3A Xbarc197 Marker 77.30 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 7D Xbarc105 Marker 88.60 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 4B Xbarc193 Marker 0.00 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 5A Xbarc197 Marker 52.60 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 3A Xbarc57 Marker 9.20 (cM) Automated name-based View Maps
3AL3-0.42-0.78 Bin assignment 42.00 - 78.00 No other positions
3AL5-0.78-1.00 Bin assignment 78.00 - 100.00 No other positions
3AS3-60-1.00 Unknown point bin assignment -100.00 - -60.00 Wheat - SSR Loci (2005) - 3A Xbarc45 Marker 43.30 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 3A Xbarc12 Marker 10.20 (cM) Automated name-based View Maps
centromere Break point 0.00 No other positions
rice chr 1 Rice chromosome 1 -100.00 - -45.00 No other positions
rice chr 1 Rice chromosome 1 -45.00 - -23.00 No other positions
rice chr 1 Rice chromosome 1 -23.00 - -5.00 No other positions
rice chr 1 Rice chromosome 1 5.00 - 42.00 No other positions
rice chr 1 Rice chromosome 1 42.00 - 78.00 No other positions
rice chr 1 Rice chromosome 1 78.00 - 100.00 No other positions