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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Bin assignment(level2)
Break point
Rice chromosome 11
Rice chromosome 11
Rice chromosome 3
Rice chromosome 3
Rice chromosome 6
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 4A
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
10 Bin assignment
2 Bin assignment(level2)
8 Break point
1 Rice chromosome 11
1 Rice chromosome 11
6 Rice chromosome 3
2 Rice chromosome 3
1 Rice chromosome 6
31 Total

Map Features

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Items 1 to 25 of 31.       of 2 | Next
Wheat - Physical Bin Map - 4A
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
3BS-8/4AS-3 0.76 Break point -76.00 No other positions
4AS-4 0.63 Break point -63.00 No other positions
4AS-1 0.20 Break point -20.00 No other positions
4AL-12 0.43 Break point 43.00 No other positions
4AL-13 0.59 Break point 59.00 No other positions
3DS-6/4AL-11, 4AL-5 0.66 Break point 66.00 No other positions
4AL-4 0.80 Break point 80.00 No other positions
4AS3-0.76-1.00 Bin assignment -100.00 - -76.00 No other positions
4AS4-0.63-0.76 Bin assignment -76.00 - -63.00 No other positions
4AS1-0.20-0.63 Bin assignment -63.00 - -20.00 No other positions
C-4AS1-0.20 Bin assignment -20.00 - 0.00 No other positions
C4A Bin assignment -5.00 - 5.00 No other positions
C-4AL12-0.43 Bin assignment 0.00 - 43.00 No other positions
4AL12-0.43-0.59 Bin assignment 43.00 - 59.00 No other positions
4AL13-0.59-0.66 Bin assignment 59.00 - 66.00 Wheat - SSR Loci (2005) - 4A Xbarc170 Marker 47.60 (cM) Automated name-based View Maps
4AL5-0.66-0.80 Bin assignment 66.00 - 80.00 Wheat - SSR Loci (2005) - 4A Xbarc70 Marker 111.90 (cM) Automated name-based View Maps
4AL4-0.80-1.00 Bin assignment 80.00 - 100.00 Wheat - SSR Loci (2005) - 4A Xbarc78 Marker 83.20 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 4A Xbarc153 Marker 116.80 (cM) Automated name-based View Maps
4AS-4-0.63-1.00 Bin assignment(level2) -100.00 - -63.00 Wheat - SSR Loci (2005) - 4A Xbarc206 Marker 0.00 (cM) Automated name-based View Maps
C-4AL4-0.80 Bin assignment(level2) 0.00 - 80.00 Wheat - SSR Loci (2005) - 4A Xbarc52 Marker 96.90 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 4A Xbarc106 Marker 22.70 (cM) Automated name-based View Maps
centromere Break point 0.00 No other positions
rice chr 3 Rice chromosome 3 -100.00 - -76.00 No other positions
rice chr 3 Rice chromosome 3 -76.00 - -63.00 No other positions
rice chr 3 Rice chromosome 3 -63.00 - -20.00 No other positions
rice chr 3 Rice chromosome 3 -20.00 - -5.00 No other positions
rice chr11 Rice chromosome 11 5.00 - 43.00 No other positions