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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Bin assignment(level2)
Break point
Rice chromosome 12
Rice chromosome 3
Rice chromosome 9
Rice chromosome 9
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 5B
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
12 Bin assignment
1 Bin assignment(level2)
10 Break point
4 Rice chromosome 12
3 Rice chromosome 3
3 Rice chromosome 9
1 Rice chromosome 9
34 Total

Map Features

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Items 1 to 25 of 34.       of 2 | Next
Wheat - Physical Bin Map - 5B
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
5BS-6 0.81 Break point -81.00 No other positions
5BS-5 0.71 Break point -71.00 No other positions
5BS-8 0.56 Break point -56.00 No other positions
5BS-4 0.43 Break point -43.00 No other positions
5BL-6 0.29 Break point 29.00 No other positions
5BL-1 0.55 Break point 55.00 No other positions
5BL-14 0.75 Break point 75.00 No other positions
5BL-9 0.76 Break point 76.00 No other positions
5BL-16 0.79 Break point 79.00 No other positions
5BS6-0.81-1.00 Bin assignment -100.00 - -81.00 No other positions
5BS5-0.71-0.81 Bin assignment -81.00 - -71.00 No other positions
5BS8-0.56-0.71 Bin assignment -71.00 - -56.00 Wheat - SSR Loci (2005) - 5B Xbarc4 Marker 27.90 (cM) Automated name-based View Maps
5BS4-0.43-0.56 Bin assignment -56.00 - -53.00 No other positions
C-5BS4-0.43 Bin assignment -43.00 - 0.00 No other positions
C5B Bin assignment -5.00 - 5.00 No other positions
C-5BL6-0.29 Bin assignment 0.00 - 29.00 Wheat - SSR Loci (2005) - 5B Xbarc109 Marker 29.70 (cM) Automated name-based View Maps
5BL6-0.29-0.55 Bin assignment 29.00 - 55.00 Wheat - SSR Loci (2005) - 5B Xbarc32 Marker 14.40 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 5B Xbarc89 Marker 37.30 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 5B Xbarc74 Marker 33.10 (cM) Automated name-based View Maps
5BL1-0.55-0.75 Bin assignment 55.00 - 75.00 Wheat - SSR Loci (2005) - 5B Xbarc140 Marker 100.40 (cM) Automated name-based View Maps
5BL14-0.75-0.76 Bin assignment 75.00 - 76.00 No other positions
5BL9-0.76-0.79 Bin assignment 76.00 - 79.00 Wheat - SSR Loci (2005) - 5B Xbarc69 Marker 120.40 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 5B Xbarc142 Marker 106.30 (cM) Automated name-based View Maps
5BL16-0.79-1.00 Bin assignment 79.00 - 100.00 No other positions
C-5BL14-0.75* Bin assignment(level2) 0.00 - 75.00 No other positions
centromere Break point 0.00 No other positions
rice chr 12 Rice chromosome 12 -100.00 - -81.00 No other positions
rice chr 12 Rice chromosome 12 -81.00 - -71.00 No other positions