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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat-Physical Bin
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 5D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Bin assignment
Bin assignment(level2)
Break point
Break point
Rice chromosome 12
Rice chromosome 12
Rice chromosome 3
Rice chromosome 9
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Wheat - Physical Bin Map [ View Map Set Info ]
Map Name: 5D
Map Start: -100.00 %
Map Stop: 100.00 %
Features by Type:
9 Bin assignment
2 Bin assignment(level2)
7 Break point
1 Break point
3 Rice chromosome 12
1 Rice chromosome 12
1 Rice chromosome 3
2 Rice chromosome 9
26 Total

Map Features

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Items 1 to 25 of 26.       of 2 | Next
Wheat - Physical Bin Map - 5D
(Click headers to resort)		 Comparative Maps
Feature Type Position (%) Map Feature Type Position Evidence Actions
5DS-2 0.78 Break point -78.00 No other positions
5DS-5 0.67 Break point -67.00 No other positions
5DS-1 0.63 Break point -63.00 No other positions
5DL-1 0.60 Break point 60.00 No other positions
5DL-9 0.74 Break point 74.00 No other positions
5DL-5 0.76 Break point 76.00 No other positions
5DS2-0.78-1.00 Bin assignment -100.00 - -78.00 Wheat - SSR Loci (2005) - 5D Xbarc130 Marker 0.00 (cM) Automated name-based View Maps
5DS5-0.67-0.78 Bin assignment -78.00 - -67.00 No other positions
5DS1-0.63-0.67 Bin assignment -67.00 - -63.00 No other positions
C-5DS1-0.63 Bin assignment -63.00 - 0.00 Wheat - SSR Loci (2005) - 5D Xbarc205 Marker 18.40 (cM) Automated name-based View Maps
Wheat - SSR Loci (2005) - 5D Xbarc143 Marker 27.90 (cM) Automated name-based View Maps
C5D Bin assignment -5.00 - 5.00 No other positions
C-5DL1-0.60 Bin assignment 0.00 - 60.00 No other positions
5DL1-0.60-0.74 Bin assignment 60.00 - 74.00 No other positions
5DL9-0.74-0.76 Bin assignment 74.00 - 76.00 No other positions
5DL5-0.76-1.00 Bin assignment 76.00 - 100.00 No other positions
5DL-7-0.29 Break point 29.00 No other positions
C-5DL7-0.29 Bin assignment(level2) 0.00 - 29.00 Wheat - SSR Loci (2005) - 5D Xbarc110 Marker 140.40 (cM) Automated name-based View Maps
5DL7-0.29-0.60 Bin assignment(level2) 29.00 - 60.00 No other positions
centromere Break point 0.00 No other positions
rice chr 12 Rice chromosome 12 -100.00 - -78.00 No other positions
rice chr 12 Rice chromosome 12 -67.00 - -63.00 No other positions
rice chr 12 Rice chromosome 12 -63.00 - -5.00 No other positions
rice chr 9 Rice chromosome 9 5.00 - 60.00 No other positions
rice chr 12 Rice chromosome 12 5.00 - 60.00 No other positions
rice chr 9 Rice chromosome 9 60.00 - 74.00 No other positions